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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … specific database of IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of …
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JGI@25: Studying Sorghum’s Survival Skills
… sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the … sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common … an anaerobe revealed that the ancestor of all these groups may have been an anaerobe who relied on fermentative …
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Custom tuning of Rieske oxygenase reactivity
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host … ground. These archaea fix carbon and nitrogen, but the viruses that infect Altiarchaea cause the cells to burst. This …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to … appropriateness of projects or experimental design, please contact Tanja Woyke, Deputy for User Programs. Technical and …
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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging … appropriateness of projects or experimental design, please contact Tanja Woyke, Deputy for User Programs. Technical and …
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Fungal Friends or Foes in Plant Roots
… apparent. Similarly, the microbes found in plant roots may have unknown roles. Some plants and fungi have mutually … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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John Vogel
… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption … Genetics and Genomics of Brachypodium. 2016 Vogel, J.P. Ed., Springer, Switzerland. ISBN: …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be … takes him to a portion of the Arkansas River that’s just a little west of Fort Collins, near a city called … are there.  ALISON:  Those invertebrate species include mayflies and the caddisflies, which are of keen interest to …
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