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… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … the pipelines for directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. … 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from …

… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Plant Datasets … Fungal Datasets …

… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists … their expertise in developing and managing public viral genomics resources such as analytical tools and data …

… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill Fenical from Scripps … of Oceanography in San Diego. Bill is a pioneer of marine natural products, getting into the ocean and looking for …

… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed … of biology, biomedical research, the health sciences and related fields who are interested in learning and sharing … human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by means of …

… grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The hallii variety … The Impact The perennial grass switchgrass ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex …

… for more details, including a downloadable pdf of products categorized by Science Program.  … , and submit your proposal online using the Work Initiation Process (WIP) interface.    For commonly asked … the JGI User Agreement will be an authorized representative from your institution (usually a legal counsel …

… JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae … often involved in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and … secondary metabolites, expanding their potential applications in the bioeconomy including biofuels, biochemicals …

… compared to the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new genome assembly resolves both haplotypes, meaning it separately represents the sets of chromosomes inherited from each … with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers …

… merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … or more genome copies from additional parents or duplication, also known as “polyploidy,” is common among flowering … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …

… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, UC Berkeley 2012 Cotton Biotechnology …

… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups … analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., …