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DAS Tool for Genome Reconstruction from Metagenomes
… been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … team led by longtime JGI collaborator Jill Banfield of the University of California, Berkeley and involving JGI … reported on the development and validation of a dereplication, aggregation and scoring tool (DAS Tool). To validate …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … grandis reference genome published in 2014 by a team led by University of Pretoria scientists with help from researchers … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory.  Now, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), to fill in … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he is the PI of the … organisms, in which case you get to go to exotic tropical locations and go snorkeling and scuba diving. And when my …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … of M. sinensis was recently published in Nature Communications by an international, multi-institutional team. The … across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … previously developed combined approach, researchers at the University of California, Berkeley and the Joint Genome … activity in bacterial lysates without further purification. The best biosensor candidates were then used to …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock … Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed …
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Toward More Efficient Artificial Photosynthesis
… Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … goal, researchers are now able to automate and fabricate synthetic chloroplasts. The artificial chloroplast … French Government ‘Investments for the Future’ Programme, University of Bordeaux Initiative of Excellence (IDEX …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … ones, a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them. … said Thomas Mock, marine microbiologist at the University of East Anglia (UEA, UK) and senior author of the …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … genes that could be used for multiple biotechnological applications. These applications include crop improvement … “Why bother keeping this?” For Stuart McDaniel’s lab at the University of Florida, an answer is in sight for a similar …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor … the culmination of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to … Cristhian Gutierrez Huerta and Bryan Rangel Alvarez, both California Alliance for Minority Participation (CAMP) … Undergraduate Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were …
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