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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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Better Living Through Bioenergy
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels … They are also the primary producers in the marine food web, forming the base of the food chain and providing energy for …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Yasuo Yoshikuni
… of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … His research focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe and …
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Triggering Morel Fruiting
… Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … in spectral alignment, molecular networking, chemoinformatics, and bioinformatics facilitates impactful …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole … address some of the most pressing challenges of our time. For more information, please visit  …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. … selected with four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … forests and the atmosphere. The team learned that some bacterial families carry genes for degrading monoterpenes … and precipitation, likely contributed. Additionally, some bacterial groups were quite specific to certain hosts, such …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … State University, which archives and makes available for research over 100,000 samples and specimens of over 60 … co-hosted by the JGI and EMSL inviting researchers to apply for a FICUS proposal. Additionally, researchers may also …
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