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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … Tomas Tyml and Frederik Schulz, Eukaryotes in Extreme Environments Theo Loreaux and mentors Simon Roux and Frederik …
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Tracking the Origins of Methane-Producing Microbes
… the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists … “JGI is famous for its work sequencing human and environmental genomes. But we now have these DNA synthesis … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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Viruses Reprogram Cells into Different Virocells
… Berkeley National Laboratory (Berkeley Lab), and the  Environmental Molecular Science Laboratory (EMSL), a DOE Office … stewarded by the DOE’s Office of Biological and Environmental Research in one proposed research project. For … approach to infecting and metabolically reprogramming the bacterial host, which was transformed into two very …
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Kjiersten Fagnan
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… review to consider the biosecurity, biosafety, and environmental aspects of the proposals. Upon approval from JGI … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … databases and recovered more than 3,000 others from environmental datasets. All of the annotations and data  are … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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The Expanding Universe of Methane Metabolisms in Archaea
… presence of methanogens in nearly all types of anaerobic environments suggest the diversity of methane metabolisms is … anaerobic methanotrophic and short-chain alkane-oxidizing archaea. They used IMG because the database … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …
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A User-Centered Approach to Accessing JGI Data
… of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… that allows plants to better survive in those environments,”  Karen Serrano said. She is first author of this … to  M. truncatula seedlings grown in a controlled environment chamber, so the fungus could colonize the plants’ … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… recent study shows that when salinity is reduced in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. Researchers were able to identify … stress resistance and ability to adapt to changing environmental conditions, researchers can explore how to better …
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