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Close association of RNA polymerase II and many transcription factors with Pol III genes
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Natural Prodcast Episode 2: The Primer, Part 2
… of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You can find links to transcripts, more information on this episode, and our other episodes at … air, email us at [email protected] .  And because we’re a User Facility, if you’re interested in partnering with us, …
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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Natural Prodcast Episode 22: Alison Narayan
… to do in lab is watch our robot. So we have a very simple, programmable robot, which is essentially a little arm with a multi-channel pipette and you can write a program that tells exactly what to do. You can get these … the substrate scope of many enzymes. And so we have limited information. There’s a lot of work to do, and that makes …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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Viral Genomics Group
… as metagenomics and metatranscriptomics provide invaluable information on virus diversity and activity in microbial … annotation and functional prediction for phage proteins user-friendly integrated pipelines (MVP) and databases … Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG). …
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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
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Plant Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … (Tokyo University) Dongfong Wang (Spelman University, VFP Program) Emerald Nash (UC Merced Intern) Tyrome Sweet (UC …
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Open Frameworks Training the Next Generation of Scientists
… of faculty and researchers describe a workforce development program for higher education that develops skills in fungal … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase … in mycology and microbiome science, respectively. These programs are resources designed to prepare early career …
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Webinar: MycoCosm Tutorial
… the organism’s ecology, mostly based on literature and user community inputs. We also have the potential to create … (see video on comparative tools) 5.  Q: Is there any programmatic access to the portal? Or any data and metadata … Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us for …
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Comparative Genomic Analysis of Phylogenetically Closely Related Hydrogenobaculum sp. Isolates from Yellowstone National Park
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