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Analyze Data
… JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  Notice Data Portal files will be …
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Picking Up Threads of Cotton Genomics
… darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project was to … co-author at Texas A&M University. “This report establishes new opportunities in multiple basic and applied scientific …
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50-year fire legacy regulates soil microbial carbon and nutrient cycling responses to new fire
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Igor Grigoriev
… National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched …
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Searching for new branches on the tree of life
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … her team work with other JGI scientists in development of new, advanced mass spectrometry research products such as … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the NCBI and one of the senior authors on the paper, of the uncovered viral diversity. “Although the technical … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … identify, and characterize more than 200 microbial genomes that were mapped to nearly 30 major previously … lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, inviting the …
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Decoding Yellowstone’s Microbial Mats
… Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered surprises, adopted new technologies, and made a few discoveries about the microbial mat denizens.  …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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Uncovering Earth’s virome
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The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production
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