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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find earlier in the … And because the average fungal genome, I don’t know, is 30 megabases? Basidiomyetes might get to 50. Some of them go to …

Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … useful tips for submitting a successful proposal. … The FY23 FICUS Open Call for Proposals describes the resources …

Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … approaches applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. …

A preview of how large-scale single cell genomics complements … A single sample was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice …

… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … and his colleagues developed first worked on a reference dataset that included genome sequences known to be … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 …

New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … Centers, the Joint BioEnergy Institute and the Great Lakes Bioenergy Research Center. O’Malley is also affiliated … (MAO), National Science Foundation grant MCB-1553721 (MAO), Office of Biological and Environmental Research …

Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … episode of the JGI  Natural Prodcast . Using this massive dataset, Nayfach clustered the MAGs into 18,000 candidate … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …

… as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the …

Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … an organism’s fitness. Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what …