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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … vastly outnumber the microbes. Advances in sequencing technologies and computational tools have uncovered a … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code throughout the entire event. All …
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The Case for Conservation
… assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … four times the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics … for viruses and other microbes , but for scientists. One emerging industry application of DGRs is to use them to …
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Benjamin Cole
… plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … plant cells respond to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel at … address some of the most pressing challenges of our time. For more information, please visit  …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … States. They also provided multiple access points to the information. The team harnessed a community-science program to … Colorado State University researchers led a consortium to study river microbiomes. To understand the microbiology of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … Community Science Project proposal with JGI, in which she’s studying a special kind of plant metabolism. This …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years … most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … 250,000 years ago, when eelgrass traveled across the ocean current from Japan to colonize the southern California and …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … the United States Government nor the University of California nor any of their employees, makes any warranty, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … Genome Institute (JGI)-UC Merced internship program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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