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Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … of the plant portal, weren’t able to complete this task. Improving the download process for this group of users … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The … for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent … multiple chemical production pathways. By tracking gene activity and chemical output over time, the team mapped how …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but …
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A Sorghum Pangenome Opens More Doors to Discovery
… of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource … work was enabled by developments in sequencing and analysis methods within the JGI’s plant program. By producing more … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix
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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Probing specificities of alcohol acyltransferases for designer ester biosynthesis with a high‐throughput microbial screening platform
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found … Tips for High Molecular Weight DNA extraction: …
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