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… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …

Over the course of the summer, the JGI-UC Merced Genomics Internship paired … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … 2017 ( read more here on her previous experience) has further solidified my plans to pursue a STEM career, …

… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic …

Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward … the “sequence to function’ umbrella, this symposium will further focus on computational approaches to characterize …

… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …

See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … … ; click on the call link to see specific details including project types supported, sample/capacity limits, and …

… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing …

A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … indicating a generalist (8X)-specialist (4X) tradeoff. Furthermore, niche modeling suggests niche evolution between … combination of genetic variation that has allowed the expansion of switchgrass’ ecological niche. The knowledge …

Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … and harness the IMG/VR database. “The SCGSR award will further my goal of resolving the poorly-understood viral … into workflows with the DOE Systems Biology Knowledgebase (KBase) , in collaboration with computational …

… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … and accurately display eukaryotic and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and …

… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …