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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … — but the experts we were able to work with on this project to ask questions about structure and function,” … feasible to look into. These candidates would work well in further experiments, so she could glean information about …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, and …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the experience …
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … Annotation. In Methods in molecular biology 1775:171-184. Furthermore, Annotration SOP with additional details is …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … indicating a generalist (8X)-specialist (4X) tradeoff. Furthermore, niche modeling suggests niche evolution between … combination of genetic variation that has allowed the expansion of switchgrass’ ecological niche. The knowledge …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … 2017 ( read more here on her previous experience) has further solidified my plans to pursue a STEM career, …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … and accurately display eukaryotic and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the … the “sequence to function’ umbrella, this symposium will further focus on computational approaches to characterize …
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