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… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, …

… the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . 39(5):578-585. Nayfach S, et …

… are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … affecting the microbe’s own eukaryote host. As their small genomes can be easily manipulated through genetic … size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an inovirus. But if …

Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the … and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new potential methanogenic, …

… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to …

… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis … understand what genes exist across the species. Earlier pan-genomes for other plants, like the soybean relative Glycine … JGI and collaborators are continuing to generate sorghum genomes to better understand sorghum’s toughness and energy …

… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … around the world are continuing to build on Hungate 1000 genomes and cultures to work toward a variety of …