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Building Sphagnum Genomic Resources
… soil carbon. In high latitudes, sphagnum can also act as a protective layer insulating permafrost from the warming … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Fungus Fuels Tree Growth
… caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that directly influence plant phenotype, such as secreted proteins. However,  M. elongata  seems to encourage the plant …
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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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JGI@25: Strengthening Soybean
… pair with maize, the dominant source of bioethanol, in crop rotation, but soybean ( Glycine max ) also has the advantage … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more …
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Matt Blow
Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human …
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Examples: Successful LOIs & Submissions
Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … rust disease resistance works in sugarcane could help protect other crops facing similar pathogens. Summary Many … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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