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… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … environments. … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … peptides, remember, are big, complicated enzyme systems that really just exist to pull an amino acid out of …

The mission of the Joint Genome Institute is to serve the scientific … Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …

… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement through … advantages for farmers concerned with improving sustainable soil management practices. … In June 2020, the Department of …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … of these environments? NADINE ZIEMERT: So we started with soil. But we also have, in collaboration with other people, … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

Over 40 percent of the cereal crop’s genes respond to drought stress. The … and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome … of publications and allowing connections between all systems to maximize the impact of user research. The crucial …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I …