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… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …

… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate … is to complement diversity surveys ( Who is there? ) with activity measurements ( Who is active when/where, and how? …

… DAN UDWARY: So I get all the podcast stats, right? And so I see all the download numbers. And so one of the things I’ve … products as an undergrad. So for me, it was studying sort of the interface of chemistry and biology because I was … seems to be a new structure, and the microorganisms are novel. I mean, we have Streptomyces , but they’re new …

… thinking about doing a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they … And you can– we spot them by you can actually see consortia of microorganisms growing on the walls. They look … at this point. So no company would ever be interested in developing them, doing the substantial amount of effort to …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …

… work on human health or on medicines per se, how do you see genome mining and looking for secondary metabolites in … that’s a really good question. I think that’s something we sort of covered in the other primers. So people should go … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …

… to solve key national challenges. The Genesis Mission consortium will connect leading industry and academic … among members that catalyze data flows and promote novel data applications. As a large-scale data generator, … will generate third-party validation of NewLeaf’s microbial plant growth promotion technologies.  …

… us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide … time called Genbiotics , which was a large program to find novel antibiotics. And this particular project focused … So it sounds very– you guys are very open to outside input, sort of an open source model. Marnix Medema: Yeah, yeah. We …

… with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that … The program seeks user proposals that integrate genomics with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that …

… Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … ), methylation analysis 131/176 Microbial Single Particle Sort Draft quality assembly of amplified genomes from sorted …

… there– but look at these things in the ocean and see those medicines inside them. And this was, I think it … currently exist. We looked at chemistry, so it’s really novel. And they’re just really exciting. And it really kind … whole lot of mass spec– but I find it really interesting to sort of compare, conceptually, that data with genomics and …

… host-microbe chemistry.  We’re interested in – like I can sort of see when I’m doing the work or thinking about something I … bacteria into the jelly coat to protect the eggs as they’re developing over about a month.  DAN: What are those bacteria … understanding its contribution to ecosystem function in the cellulolytic fungus-growing ant symbiosis JGI Community …