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… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … student in my group, Satria [Kautsar] built a really nice visualization tool around it, so you would actually be able … into 100, for example, sub domains”, where he made a big phylogeny of all the proteins that had the protein domain. …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … expands the bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to identify, … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Program focuses on developing computational tools and visualization resources that support user analysis of … of the world’s most pressing challenges. … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … And one would envision that microorganisms have evolved multiple variations of these compounds. And so if you’re … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function …