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… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … have been sequenced by the JGI though not formally analyzed or published.  The purpose of the program is to: Build …

… especially when we start talking to people who specialize in that area. In this primer, we talk about my favorite … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …

… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols … Tips for High Molecular Weight DNA extraction: …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It … support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … we conducted an extensive internal product audit to analyze the scientific value, demand, and costs of current … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less …

… of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …

… I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … computational work. And that it involves some of these crazy genes, some of these enormous genes that encode these … time called Genbiotics , which was a large program to find novel antibiotics. And this particular project focused …

… We should do some kind of special sound effect like a kazoo. DAN UDWARY: I do have some beeps and stuff that I can … seems to be a new structure, and the microorganisms are novel. I mean, we have Streptomyces , but they’re new … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We …