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Microbial Program
… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global … Notice Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: … ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … data repositories for genome information with analysis tools for mining and prediction The JGI works in partnership …
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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DNA Synthesis Science User Advisory Committee
… The DNA Synthesis Science User Advisory Committee is chartered by the Program Head and report back to them. The Committee is chartered to render advice, guidance, and counsel on the effective …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … provides customized analysis, the JGI also participates in publication of results. …
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to …
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Products
… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs …
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