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… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, and …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … into our integrated microbial genomes system, which is our comparative analysis system. Once that is completed, the …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …