Search

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … japonica DSM16522 R Robertson, et. al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome … Matt Escobar,  CSU San Marcos          "This was our first paper . It was definitely interesting going through …

… last two years or so. SMC is now released and ready for the public to tear it up. I’m super excited about this thing, … gave you a little introduction during my intro part of the first one that you were on. But that’s not nearly enough. … Clusters. And at the time, it was a really good resource for secondary metabolism BGCs at a time when it was …

… of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse … At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of experimental … & Metabolomics Instrumentation … Metabolite Submission Resources & Guidelines … Metabolomics Platform Lead … More …

… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … with the computer work, right? Which I had to get into first, and the standing trees. And he had this whole idea of … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … cultivated representatives. The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which … strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to only three phyla. …

… uncertain whether that meeting was going to happen in the first place. And yet everything got canceled due to the … whoever wants to contribute. And make this an open resource that is owned by the community. And then I … data on something you’ve published and you put it in a public database, people are able to find your gene cluster …

… biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … and ecosystems. Identifying and analyzing primary and secondary metabolites helps uncover their roles in processes … … Projects and Initiatives … Metabolomics Program Head … Resources and Tools …

… back for our second season of Natural Prodcast. This first episode up is another primer episode. These are … find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

Our data platforms are a key resource for the broader scientific … resource for comparative analysis and annotation of all publicly available genomes from three domains of life, in a …

Barona-Gomez. And so he is here to, at least, talk to us, first about my definitions of things and why I am wrong, and … farms from other fungus that want to take advantage of that resource. So in those type of situations, what we would like … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… if you ended up here somehow without having listened to the first part, you might be a little lost, and I’d suggest you … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … is usually one of the, you know, important environmental [resources] that plants need to grow. And so, yeah, so these …

… about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to the … JGI acts on its goals in — and builds out its capabilities for — secondary metabolism research, “Natural Prodcast” …