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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … genomes and sequences together at once, producing a pangenome resource for sorghum , recently reported in Nature … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … conference that took place in January this year in San Diego, and that city is where I first met Roger, when we … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time …
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Publication Policy
… contributions, ensure that all contributors to a research project are appropriately recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … such efforts should specify the collaborative nature of the project. Journal policies typically expect authorship to …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … are, I hope?  ALISON: Oh, yeah, yeah.. DAN: Yeah, we’re in San Diego! We’re at the SIMB natural products conference. … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … so I’m hoping we can follow up with him again as the project progresses! If you’re interested in RiPPs, I’ll put … to work in that environment. Yeah, so that was here in San Diego. So yeah, so I did feel very lucky. John, was a …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast … The Microbial Program focuses on using advanced sequencing technologies to explore microbial … with isolate collections to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural product reports … So we both went to Scripps [Institution of Oceanography in San Diego] together. And I worked for Brad Moore as a …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the …
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