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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is … and data analyses compile original data for improving fungal genomic resources empower students through isolation …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie … bacteria with symbiotic relationships in plant roots of legume crops such as soybeans and peas. Their …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …
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Natural Prodcast Episode 5: Brad Moore
… Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … right from the beginning, I always wanted to be true to my roots, and always work with marine systems because that’s … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … Catalog of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: …
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose of the program is to: Build curiosity and illustrate the …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … help solve energy and environmental challenges. Maximizing soybean yield is critical to energy independence in the U.S. …
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Natural Prodcast Episode 17: Cassandra Quave
… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany …
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