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… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …

JGI Mission As a U.S. Department of Energy Office of Science … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a DOE Office of Science User Facility at Lawrence … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and …

Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … to the marine environment, looking at more like holistic or big picture view, if we’re still around in a decade. We have … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … mining. So we’re here in California. And gold mining was a big endeavor. And I’m no expert, but the way that I … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …

… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … presence. ALISON: Wow, that’s bananas. I mean, it’s so big this program. Like how – is like Jo just the ambassador … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …

… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … they merged with Beecham and SmithKline and became a much bigger company. But, yeah, he was mucking around with … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for …

… genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural product … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … in the past, we’ve had these monolithic databases, NCBI and IMG , that have a lot of data and really useful data, really …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better … Clum, A. et al. (2021)  DOE JGI metagenome workflow …

… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … and symbiotic relationships. If you think you have a big idea that fits within our mission, we’re happy to help … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have …