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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

… are preserved in the Culture Collection of Fungi from Extreme Environment, the Italian National Antarctic Museum … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …

… is a bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of the things I did want to … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …

… and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … requirements as other academic lead institutions. OTHER DOE NATIONAL LABORATORIES:  A version of the Bilateral DOE … Before work can begin on proposals submitted by researchers from another DOE National Laboratory, a JGI-BDLUA ,  BDLUA …