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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … data types as well as in advanced assembly and engineering strategies for DNA synthesis applications. If JGI personnel …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … functions. The Metabolomics Program focuses on advancing tools and technologies to analyze metabolites in …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …