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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … data types as well as in advanced assembly and engineering strategies for DNA synthesis applications. If JGI personnel …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …
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Publications
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Natural Prodcast Episode 11: Marnix Medema
… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … selfishly. Of course, this was also very important for the whole community, so. This resonated with a lot of people, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and … group and focused on new technologies and optimizing tools — including strain engineering — to make them more …
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IMG Group
… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … of microbiome omics data Developing forward-looking strategies for the deployment of computational workflows at …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Plant Program
… behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … productivity. These insights have the potential to inform strategies that improve agricultural yields and support … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …
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