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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Publications
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of those in there, too. Mm-hmm, sure. And so, when we got rolling on the secondary metabolism part of it, what I was …
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Metagenome Program
… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a critical role in …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing and sequencing capabilities. … An assay used for profiling transcription factor binding sites across entire …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of Energy is uniting National Labs and industry, including … funded by an industry partner to perform a defined scope of work using the JGI’s unique facilities, equipment, and …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … integrated into the code base. And at the moment, we have rolling updates, so maybe a few months later it would appear … of the community. Dan Udwary: Well, that brings us full circle back to my introduction. So maybe that’s a good place …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the …
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