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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …
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New Lineages of Life Group
… and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Rice SNP-seek database update: new SNPs, indels, and queries
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Publications
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Natural Prodcast Episode 11: Marnix Medema
… efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide … into the code base. And at the moment, we have rolling updates, so maybe a few months later it would appear on the …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI …
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Partnerships Development Team
Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … to license Lab inventions generated through the CRADA.  … New Leaf Symbiotics is partnering with the JGI and Berkeley … quantify atmospheric gas mitigation properties of multiple rice plant growth promotion technologies using …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… interviews, but instead it’s two interviews in one. My new co-host, Jackie Winter, has been on a few episodes now, … and InterProScan. And all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would sequence the whole thing, and you’d use that to then seek out the other pieces of the pathway. And so it was … there that’s not JGI’s. It’s called MIBiG , which is the database that has the “minimum information about a …
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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … ancient times! We know how to ferment beers or wines or rice liquors etc. So, by sequencing the genome of … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Natural Prodcast Episode 18: A CSP Primer
… be it for, again, metagenome, metatranscriptomes for SNP analysis if somebody has a resequencing project. For … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … They’re not as involved, I would say. And each call gets updated constantly. In fact, we’re just rewriting the …
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