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… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work …

The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and …