Search

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… The purpose of this policy is to establish communication norms around JGI contributions, … which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from … will be the development of tools and infrastructure for microbiome data science, and the development of new …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …

… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value …

… We need new cancer agents. We need treatments for humans. And it just so happens that bacteria make a lot of … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog …

… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and … two-factor authentication enabled to log in. Check our Help Site for additional information, including a Login …

… which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence the … where you have to go miles underneath the surface where no human has ever tread And that there’s very, very, very low …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …