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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … with a list of JGI staff who contributed to their project, using the CRediT taxonomy ( credit.niso.org/ , with …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … services while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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Industry Engagement Program
… Industry Partners access to our vast set of resources:  JGI sequencing technologies include scaling technologies and … from diverse biological and environmental samples by using advanced computer analysis coupled with liquid … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to …
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DNA Synthesis Program
… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … plays a central role in advancing functional genomics, focusing on developing genetic systems that can address global … in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of strain engineering efforts. We did a lot of … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Developing rapid and accurate methods for identifying potential … threats in environmental samples. This work combines third generation sequencing and machine learning to enable fast, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … it was a biosynthetic pathway, then you would sequence the whole thing, and you’d use that to then seek out the other …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex … reconstruction of complete or near-complete population genomes directly from the environment. These advances have …
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