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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … because secondary metabolism genes are duplications of primary metabolism genes. They have evolved together or been …

… NOTICE The Data Portal application has replaced the JGI Genome Portal . Book a session via the appointment calendar … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing of …

… Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … A complete publication list available at Google Scholar. Dutkiewicz, Z. … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … especially metatranscriptomics, to better highlight and ultimately predict the main viral impacts in these microbiomes. …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … Diversification of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …