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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in … and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for uncultivated …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though …

… cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The …

… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  … Tips for High Molecular Weight DNA extraction: …

… Cataloging Earth's microbial lineages through advanced genomic techniques and … reveal new lineages and functional capabilities in the microbial world. … A complete publication list available at Google Scholar. Dutkiewicz, Z. … A.I., Mars Brisbin, M., Hu, S.K. et al. (2024) “ Missing microbial eukaryotes and misleading meta-omic conclusions …

… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … We are using cutting-edge single-cell profiling methods, including single-cell RNA-seq, …

… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … terrestrial biogeochemical processes, development of high performance plants and microbes, and understanding … ENVnet can be used in your custom Python applications but highly recommend using the workflow in  GNPS2 .   …

… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … including especially metatranscriptomics, to better highlight and ultimately predict the main viral impacts in … these omics data must be complemented with single-cell resolution assays that can be targeted towards specific …