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… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … the research community to perform large-scale multi-omics analyses on new and existing microbiome data.   … The IMG/M …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program provides high-quality, large-scale genomic data to advance microbial research that drives … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass …

… and biogeochemistry. This research helps translate their genomic potential into practical applications, including … on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, … genomes, and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … genomes, and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phytozome is …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's …