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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… such datasets. The program also collaborates with isolate collections to complete large-scale sequencing projects, … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … we did at WarpDrive was exactly in this kind of a vein. We sequenced in the end about 150,000 genomes, just to look for …

The Metagenome Program uses advanced sequencing technologies to … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … a community plasmid resource, comprising the largest public collection of plasmid sequences identified from genomes, …

Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … Dutch company DSM for quite some time. So they had actually sequenced the genome a number of years earlier as one of the … Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And so yeah, we use antiSMASH to identify …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … in the news recently – TSRI has acquired the Pfizer strain collection. And so that’s a big collection of natural … this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … with genomics, transcriptomics, imaging, and other data from EcoFAB systems can provide novel insights into the …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …