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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …

… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … together to try to understand the enzymology of their synthases so that we can start to use the DNA sequence to … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …

… and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … Island. And was working on a natural products/biosynthetic gene cluster database, and a tool for predicting natural … nicer than MIBiGC or MIBIC. Dan Udwary: Yeah. And the big family continues. So next I think was BiG-SCAPE and now …

It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … chagrin found that they had the same conserved polyketide synthase and then P3. We still don’t know why 20 years … On target identification and cancer biology: “Apoptolidin family glycomacrolides target leukemia through inhibition of …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of those kinds of genes. So we know what a polyketide synthase looks like. We know what a non-ribosomal peptide or … all of your non-ribosomal peptides. It’ll find all of your terpenes and RiPPs and all kinds of other things that are …

Survey of Setaria's natural diversity reveals seed dispersal in wild … and bring them back to the lab. The weedy grass was green millet (Setaria viridis), a small model grass with a short … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet …

… genomics existed. This is before we’re even thinking of genes and connecting genes to molecules, which is something … out, that high repeat sequence area encoded a polyketide synthase, with many modules of high identity, and the … acid. It’s a pretty small, organic molecule, and it has a terpene region on it. And we’ve been doing some terpene …

… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … climate and soil conditions around the globe to identify genes to improve our domesticated species.  The program … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … JGI scientists are able to link metabolic activity with gene expression, providing deeper insights into functional … a web-based service returns a list of scored reaction and gene matches associated with metabolites and a list of …