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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … genomes claimed (or about one per student) Seven student-drafted articles accepted with over 20 more in draft Efforts … 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the program … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … we were working with tunicates, and tunicates living with cyanobacteria, and various other types of bacteria. So I got … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …