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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … of data produced at the facility, provided this is done in a timely fashion. The publications resulting from …

… fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient … changes. With advanced mass spectrometry techniques and computational tools, the program supports foundational … interactions under controlled conditions, microcosms can be designed and studied in  EcoFABs as a synthetic microbiome.  …

… innovative research in synthetic biology, the program enables the design and synthesis of complex genetic pathways and … include developing innovative screening technologies and computational tools that enhance biofuel production and …

… … DAN: You’re listening to the US Department of Energy Joint … BEN: You know, to say, man-made compounds. How can you design a drug, right? You design drugs  based on certain … So, we were essentially using brute force to isolate the proteins. The proteins are the biological version of the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … developments in microbial genomics, metagenomics, and computational biology, and to empower them with the … to perform computational analysis. IMG/M user interface is designed for use by microbiologists to quickly bridge the …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers … Lab : a user science group dedicated to user project design, assembly, and quality control Strain Engineering … of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial … and single cells. This effort uncovers novel genes, protein families, and pathways, enhancing our understanding …

… up now with JGI is we identified using some different computational methods a bunch of different syntheses that … more structural diversity — so that one uses acyl carrier proteins as co-substrate. So the other ones they use CoA … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… on this: Most of the machinery in any living organism are proteins, which are made up of chains of amino acids. … A second area that I’m really interested in is how to use design principles to make new compounds. And that’s related … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of … using deep-coverage RNA-seq analyzed in a consistant computational framework. It enables cross-species … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … briefly describing the project motivation, experimental design, capabilities to be used and DOE mission relevance. … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope …