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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, … allowing connections between all systems to maximize the impact of user research. The crucial elements are  proposal …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … scientific discovery. Projects focused on organisms for comparative purposes, on model systems for microbe-microbe … genome-enabled understanding of microbial behavior with an impact on the physical, chemical, and geochemical processes …

… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … the coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral Genomics Group is … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …