Search

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …

… strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … technology in order to enhance the quality of single-cell genomes and directly link functional information with …