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FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal … Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … genome mining is, if I want to explain that to someone who doesn’t know much about genetics or anything else, science …

UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … what are you going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a … proposals as well. I’ve been at the JGI for 20 years, and 10 of those years, I’ve been a project manager. MENAKA …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is a … rights, rights in technical data, project reporting to the DOE, and publication requirements. An official with …

The Facilities Integrating Collaborations for User Science (FICUS) call … to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … demonstration of a technology that would be applicable to DOE mission is appropriate. For accepted proposals, …

… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … check it out. You can get more info at usermeeting.jgi.doe.gov . And I’ll be sure I put that link in the show … had a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a …

… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … a sustainable bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. … (coastal here defined  by NOAA as the area within 185 km/100 nautical miles of land), and the subsurface. … About Us …

Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was …

The Facilities Integrating Collaborations for User Science (FICUS) … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to … the other participating facilities, is then forwarded to DOE for final approval.  Following DOE approval, project …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying …

… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too many others to name at JGI … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for … & quality requirements for samples submitted to the DOE JGI. Plate-based Preparation Guidelines DNA Preparation …