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The IMG group owns and maintains integral components of JGI’s … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based on their pairwise AF and ANI …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … drives sustainable solutions in energy, agriculture and ecosystem management. … The Microbial Program focuses on … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … the environment. These advances have led to groundbreaking discoveries in diversity and novel functions identified in …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and … and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are designated DOE …

… sources and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … on Phytozome … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the …

… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, … merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of the … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is …

Microbes drive critical ecosystem functions and affect global nutrient cycling, … constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …

… target is based on 98% of the total available hours.   FY 2016 DOE Metrics 1,391 unique* JGI users in FY2016 … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new computationally enabled approach …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization …

… but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …