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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced …

Biology is currently experiencing a revolution brought on by rapid developments in … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … as well as microbial and plant responses to environmental changes. With advanced mass spectrometry techniques and … the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical …

The CSP Functional Genomics call is to enable users to perform … genomics research and to help them translate genomic information into biological function.  The emphasis is on projects …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …