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… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… The purpose of this policy is to establish communication norms around … published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … Upon request, JGI staff will provide Users with a list of contributors and their corresponding ORCiD and relevant …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and … The research efforts of the group have concentrated in demonstrating the power of …

… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …

… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … microbial natural products in an ordered way for perhaps 80 years. And in that time, we have discovered many thousands …

… batch of episodes that I did at the SIMB meeting … two years ago? Yeah, it would be two years ago.  NIGEL MOUNCEY: … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five years, working through two journal contracts for the …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable …