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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … are biosynthesized and their roles in the environment, can unlock new avenues for bio-based products and bioenergy …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … expect authorship to include all those contributing significantly to the work. The intent of this policy and the lists …
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Institutional User Agreements
… proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 14: Nigel Mouncey
… was found on an old rum still, which– you’ve got this very sugary environment. It’s a compound that clearly kills … as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I think this is really– I personally like this really as a model for a collaboration. You have your code as open source … oomycete pathogens. In this case they worked on a system of sugar beets where bacteria on and inside the roots were …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … aflatoxin being a secondary metabolite from an Aspergillus species that is pretty toxic – can cause liver … more interested just to see if we can use Aspergillus as a model for expressing hard to work with eukaryote [genes]. So …
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … A primary purpose of this project is to bring educators from a broad range of …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a critical role in … The program’s fungal genomics research explores new metabolic processes and enzymes that can be applied in …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … way, where we had– aflatoxin is produced by a fungus called Aspergillus . We were mostly working in Aspergillus …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … about what they need to advance their science, and what JGI can do to help that. So here we are. This is the first … or it might be as big a part of its life as metabolizing sugars, but it’s something that we decide is not so …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … hoping this episode and the transcripts will be one thing I can point people to when it comes to getting out information … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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