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… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …

JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… can just mediate so many kinds of interactions. And by understanding them, we can promote the health and … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … know about, are clustered in fungi. Plants are a different story and much more complicated. And there’s a reason we …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based on their pairwise AF and ANI … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, …

… just– and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence … so every natural product discovery campaign has to have a story. And it can be looking for drugs from marine … go in the cave, the less dilution. You can be down to 1 on 100 in a deep portion of a cave. So it just– it really, …

… usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, … between the, what you expect on evolutionary natural history with a chemical history. So it is not an easy one, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 … ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from … fractionated using a density gradient, and each fraction is sequenced Combined assembly of related fractions originating …

… people all over the word who have a common interest, united by natural products, DAN: You guys have put together a … getting.  The other thing is really remarkable. So, as a history, right, if I am using probably a most simple-minded … discovery of penicillin from the fungal species – probably told us that fungi could be very productive sources for, …