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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … detailed characterization of model systems to explore the dynamics of microbial ecosystems and their evolution. The … effort aimed to develop standards, processes, and infrastructure for an integrated microbiome data ecosystem. … …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … so no programming knowledge and no dedicated compute infrastructure is required to perform computational analysis. …
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Programs & Platform Leads
… the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, … and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … optimization of cell- and cell free-based expression platforms, tools and data for deciphering regulatory …
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Publications
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, and …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … “tail of the acyl homoserine lactone” can have different structures, and that is akin to what you’re referring to … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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