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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … No. DE-AC02-05CH11231) in collaboration with the user community.” … Read this publication policy in full, …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

… using single cell approaches. This includes linking strain-level genetic variation to ecological niche … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation …

… analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of … colitis reveals a disease-associated bacteriophage community.  Nat Microbiol. 3(9):1023-1031 Harrington LB et … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… is because this compound when they were first structurally resolved in the 1980s, they were known as the most toxic … not only I say we were able to make use of it, but also the community can benefit from the technology. But even better, … were in the news recently – TSRI has acquired the Pfizer strain collection. And so that’s a big collection of natural …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including … in unexpected microbial clades. We leverage  genome-resolved metagenomics and targeted gene searches to expand …

The Community Science Program (CSP) provides the scientific … synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no … expression and functional exploration.  The developed strains represent an additional phase of user-accessible …

… global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … everybody uses, is called antiSMASH . And it is another community effort that’s been built up over the years and is …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … algae, examining both natural populations and engineered strains. This approach allows for the identification of key … comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a comprehensive …