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Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … names (or for metagenomes, sample names).  Need help naming your organisms? See our Taxonomy Quick Guide. PM …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements … analysis of viral genome fragments derived from metagenomic samples … IMG/PR serves as a community plasmid resource, …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … of micro-eukaryotes directly isolated from environmental samples.  … The IMG/M system serves as a community resource … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog …

The IMG group owns and maintains integral components of JGI’s production workflow, … them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … in collaboration with other people, lake sediments. We have microbiomes from different organisms, including the human …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized quantitative analysis strategy for stable … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …