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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, and … be given to projects that address the areas of special emphasis that are listed in the call and leverage the …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … of the world’s most pressing challenges. … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, … effort aimed to develop standards, processes, and infrastructure for an integrated microbiome data ecosystem. … …
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New Lineages of Life Group
… metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …
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Publications
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and including those …
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Mission
Lawrence Livermore National Laboratory and the HudsonAlpha Institute for Biotechnology . We are located in the … earth, and environmental systems for energy and infrastructure security. The BER research program seeks to … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Importantly, IMG/M provides data and tools via a graphical user interface, so no programming knowledge and no dedicated compute infrastructure is required to perform computational analysis. …
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Soil pH influences the structure of virus communities at local and global scales
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Microbiome Data Science Team
… of the global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence data. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Plant Program
… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … and the environment. At its core, the program investigates photosynthesis — the process that transforms solar energy … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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